Genomic studies using the invertebrate chordate Ciona intestinalis
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منابع مشابه
Using a custom Ciona intestinalis genome browser to visualize genomic conservation with Ciona savignyi
We have successfully designed a custom genome browser for visualization of the genome of the invertebrate chordate Ciona intestinalis. We describe the use of the genome browser to visualize the conservation between Ciona intestinalis and a related species, Ciona savignyi. Visualizing genomic conservation between these two organisms is important for determining genes and regulatory regions that ...
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Gene number can be considered a pragmatic measure of biological complexity, but reliable data is scarce. Estimates for vertebrates are 50-100,000 genes per haploid genome, whereas invertebrate estimates fall below 25,000. We wished to test the hypothesis that the origin of vertebrates coincided with extensive gene creation. A prediction is that gene number will differ sharply between invertebra...
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With the sequencing of hundreds of genomes and the advent of high-throughput technologies able to produce high volumes of genomic information at increasingly faster rates and cheaper costs, there is a vital need for proper visualization tools for analyzing large amounts of genomic data. In this report, we implement a genome visualization tool for the model organism Ciona intestinalis. The tool ...
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We applied independent species concepts to clarify the phylogeographic structure of the ascidian Ciona intestinalis, a powerful model system in chordate biology and for comparative genomic studies. Intensive research with this marine invertebrate is based on the assumption that natural populations globally belong to a single species. Therefore, understanding the true taxonomic classification ma...
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Gerardo M. Nava, David Y. Lee, Javier H. Ospina, Shi-Ying Cai, and H. Rex Gaskins Division of Nutritional Sciences, Institute for Genomic Biology, Departments of Animal Sciences and Pathobiology, University of Illinois at Urbana-Champaign, Urbana, Illinois; Mount Desert Island Biological Laboratory, Salisbury Cove, Maine; and Liver Center, Yale University School of Medicine, New Haven, Connecticut
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